A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
- Run Name
- R028
- Run Id
- r54063_20181211_143459
- Instrument
- Sequel 54063
- Run Date
- 2018-12-11
- CreatedBy
- slameira
Report generated on 2020-06-23, 17:44 based on data in:
/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/e5/281c3ec25626ad507e153b3d2efe2a/m54063_181211_144629_adapter.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/e5/281c3ec25626ad507e153b3d2efe2a/m54063_181211_144629_control.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/e5/281c3ec25626ad507e153b3d2efe2a/m54063_181211_144629_lengths.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/e5/281c3ec25626ad507e153b3d2efe2a/m54063_181211_144629_loading.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/e5/281c3ec25626ad507e153b3d2efe2a/m54063_181211_144629_overview.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/e5/281c3ec25626ad507e153b3d2efe2a/m54063_181211_144629_productivity.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/e5/281c3ec25626ad507e153b3d2efe2a/m54063_181211_144629_subreads.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/8e/09df35767bb3c6eef9ffe971bd055f/m54063_181212_112538_adapter.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/8e/09df35767bb3c6eef9ffe971bd055f/m54063_181212_112538_control.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/8e/09df35767bb3c6eef9ffe971bd055f/m54063_181212_112538_lengths.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/8e/09df35767bb3c6eef9ffe971bd055f/m54063_181212_112538_loading.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/8e/09df35767bb3c6eef9ffe971bd055f/m54063_181212_112538_overview.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/8e/09df35767bb3c6eef9ffe971bd055f/m54063_181212_112538_productivity.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/8e/09df35767bb3c6eef9ffe971bd055f/m54063_181212_112538_subreads.txt/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/b3/9786f0c2183b7be8b128b5a0d41f29/1_A01_mqc.png/bioinfo/users/talaeita/git/pacbio-smrtlink/pbRunQC/work/14/18aeda32dab0d57d312b075a622944/2_B01_mqc.png
Status
Status first table.
| Well | Well Cell Name | Data Set | Movie Time | Organism | Kit Version | SMRT Link Version | Metadata Context Id |
|---|---|---|---|---|---|---|---|
| 1_A01 | H358_DMSO | H358_DMSO-Cell1 | 10 hrs | homo_sapiens | 3.0 | 6.0 | m54063_181211_144629 |
| 2_B01 | H358_DMSO | H358_DMSO-Cell3 | 10 hrs | homo_sapiens | 3.0 | 6.0 | m54063_181212_112538 |
Raw Data Report
Raw Data Report length table.
| Well | Polymerase Read Bases | Polymerase Reads | Polymerase Read Length (mean) | Polymerase Read N50 | Subread Length (mean) | Subread N50 | Insert N50 | Insert Length (mean) | Unique Molecular Yield |
|---|---|---|---|---|---|---|---|---|---|
| 1_A01 | 19327327 | 490 | 39444 | 73864 | 1470 | 2114 | 3050 | 2571 | 0.00 Gb |
| 2_B01 | 21968510 | 576 | 38140 | 70417 | 1578 | 2091 | 3118 | 2694 | 0.00 Gb |
Adapter Report
Adapter Report Adapter table.
| Well | Adapter Dimers (0-10bp) % | Short Inserts (11-100bp) % | Local Base Rate |
|---|---|---|---|
| 1_A01 | 0.00 | 0.00 % | 2.74 |
| 2_B01 | 0.00 | 0.00 % | 2.87 |
Control Report
Control Report Control table.
| Well | Number Of Control Reads | Control Read Length Mean | Control Read Concordance Mean | Control Read Concordance Mode |
|---|---|---|---|---|
| 1_A01 | 8737 | 37651 | 0.87 | 0.89 |
| 2_B01 | 10961 | 36124 | 0.86 | 0.89 |
Loading Statistics
Loading Statistics productivity table.
| Well | Productive ZMWs | Productivity 0 | % | Productivity 1 | % | Productivity 2 | % |
|---|---|---|---|---|---|---|---|
| 1_A01 | 1009609 | 229107 | 22.69 % | 498841.00 | 49.41 % | 290398.00 | 28.76 % |
| 2_B01 | 1007385 | 151191 | 15.01 % | 587328.00 | 58.30 % | 279827.00 | 27.78 % |
Productivity
Productivity productivity_stat
1 A01
1 A01 Embedded image 1_A01_mqc.png
2 B01
2 B01 Embedded image 2_B01_mqc.png